Mise, K., Koyama, Y., Matsumoto, A., Fujita, K., Kunito, T., Senoo, K., and Otsuka, S. (2020).
Pectin drives microbial phosphorus solubilization in soil: Evidence from isolation-based and community-scale approaches.Eur J Soil Biol. 97: 103169.
Reiko Fujimura, Yoichi Azegami, Wei Wei, Hiroko Kakuta, Yutaka Shiratori, Nobuhito Ohte, Keishi Senoo, Shigeto Otsuka and Kazuo Isobe (2020).
Distinct Community Composition of Previously Uncharacterized Denitrifying Bacteria and Fungi across Different Land-Use Types.Microbes and Environments, 35(1). doi: 10.1264/jsme2.ME19064
Nan Gao, Chaowei Zhou, Weishou Shen, Sayuri Ota, Yutaka Shiratori, Tomoyasu Nishizawa, Kazuo Isobe, Xinhua He, Hanjie Ying and Keishi Senoo (2019).
Genome Sequence of Novoherbaspirillum sp. UKPF54, a Plant Growth-Promoting Rhizobacterial Strain with N₂O-Mitigating Abilities, Isolated from Paddy Soil.
Microbiology Resource Announcements, 9(3): e00999-19. doi: 10.1128/MRA.00999-19
Zhenxing Xu, Yoko Masuda, Hideomi Itoh, Natsumi Ushijima, Yutaka Shiratori, Keishi Senoo (2019).
Geomonas oryzae gen. nov., sp. nov., Geomonas edaphica sp. nov., Geomonas ferrireducens sp. nov., Geomonas terrae sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus Geobacter as Members of the Genus Geomonas gen. nov..Frontier in Microbiology,10: 2201. doi: 10.3389/fmicb.2019.02201
Kazuo Isobe, Yuta Ise, Hiroyu Kato, Tomoki Oda, Christian E. Vincenot, Keisuke Koba, Ryunosuke Tateno, Keishi Senoo, Nobuhito Ohte (2019).
Consequences of microbial diversity in forest nitrogen cycling: diverse ammonifiers and specialized ammonia oxidizers.The ISME Journal, 14: 12-25. doi: 10.1038/s41396-019-0500-2
Yoko Masuda, Takashi Matsumoto, Kazuo Isobe and Keishi Senoo (2019).
Denitrification in paddy soil as a cooperative process of different nitrogen oxide reducers, revealed by metatranscriptomic analysis of denitrification-induced soil microcosm.Soil Science and Plant Nutrition, 65: 342-345. doi: 10.1080/00380768.2019.1622401
Tsunehiro Watanabe, Ryunosuke Tateno, Shogo Imada, Karibu Fukuzawa, Kazuo Isobe, Rieko Urakawa, Tomoki Oda, Nanae Hosokawa, Takahiro Sasai, Yoshiyuki Inagaki, Takuo Hishi, Hiroto Toda, Hideaki Shibata (2019).
The effect of a freeze–thaw cycle on dissolved nitrogen dynamics and its relation to dissolved organic matter and soil microbial biomass in the soil of a northern hardwood forest.Biogeochemistry, 142(3): 319-338. doi: 10.1007/s10533-019-00537-w
2018
Fujita, K., Kunito, T., Matsushita, J., Nakamura, K., Moro, H., Yoshida, S., Toda, H., Otsuka, S., and Nagaoka, K. (2018).
Nitrogen supply rate regulates microbial resource allocation for synthesis of nitrogen- acquiring enzymes. PLoS ONE, 13: e0202086.
Jeonghwan Jang, Naoaki Ashida, Ayaaki Kai, Kazuo Isobe, Tomoyasu Nishizawa, Shigeto Otsuka, Akira Yokota, Keishi Senoo and Satoshi Ishii (2018).
Presence of Cu-type (NirK) and cd1-type (NirS) nitrite reductase genes in the denitrifying bacterium Bradyrhizobium nitroreducens sp. nov.Microbes Environ., 33: 326-331. doi: 10.1264/jsme2.ME18039
Kazumori Mise, Kazuki Fujita, Takashi Kunito, Keishi Senoo and Shigeto Otsuka (2018).
Phosphorus-mineralizing communities reflect nutrient-rich characteristics in Japanese arable Andisols.Microbes Environ., 33: 282-289. doi: 10.1264/jsme2.ME18043
Kazuo Isobe, Hiroaki Oka, Tsunehiro Watanabe, Ryunosuke Tateno, Rieko Urakawa, Chao Liang, Keishi Senoo and Hideaki Shibata (2018).
High soil microbial activity in the winter season enhances nitrogen cycling in a cool-temperate deciduous forest.Soil Biol Biochem, 124: 90-100. doi: 10.1016/j.soilbio.2018.05.028
Pokchat Chutivisut, Kazuo Isobe, Sorawit Powtongsook, Wiboonluk Pungrasmi and Futoshi Kurisu (2018).
Distinct Microbial Community Performing Dissimilatory Nitrate Reduction to Ammonium (DNRA) in a High C/NO₃- Reactor.
Microbes Environ, 33: 1342-6311. doi: 10.1264/jsme2.ME17193
Kazuo Isobe, Junko Ikutani, Yunting Fang, Muneoki Yoh, Jiangming Mo, Yuichi Suwa, Makoto Yoshida, Keishi Senoo, Shigeto Otsuka and Keisuke Koba (2018).
Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in nitrogen-saturated forest soils.Soil Biol. Biochem., 122: 220-227. doi: 10.1016/j.soilbio.2018.04.021
Zakaria M. Solaiman and Keishi Senoo (2018).
Arbuscular mycorrhizal fungus causes increased condensed tannins concentrations in shoots but decreased in roots of Lotus japonicas.Rhizosphere, 5: 32-37. doi: 10.1016/j.rhisph.2017.11.006
Nanae Hosokawa, Kazuo Isobe, Rieko Urakawa, Ryunosuke Tateno, Karibu Fukuzawa, Tsunehiro Watanabe, Hideaki Shibata (2017).
Soil freeze–thaw with root litter alters N transformations during the dormant season in soils under two temperate forests in northern Japan.Soil Biology and Biochemistry, 114: 270–278. doi: 10.1016/j.soilbio.2017.07.025
Akihiko Terada, Sho Sugawara, Keisuke Hojo, Yuki Takeuchi, Shohei Riya, Willie F Harper Jr, Tomoko Yamamoto, Megumi Kuroiwa, Kazuo Isobe, Chie Katsuyama, Yuichi Suwa, Keisuke Koba, Masaaki Hosomi (2017).
Hybrid Nitrous Oxide Production from a Partial Nitrifying Bioreactor: Hydroxylamine Interactions with Nitrite. Environmental Science and Technology, 51: 2748–2756. doi: 10.1021/acs.est.6b05521
Fujita, K., Kunito, T., Moro, H., Toda, H., Otsuka, S., and Nagaoka, K. (2017).
Microbial resource allocation for phosphatase synthesis reflects the availability of inorganic phosphorus across various soils.Biogeochemistry, 136: 325-339. doi: 10.1007/s10533-017-0398-6
Satoshi Ishii, Naoaki Ashida, Hiroki Ohno, Takahiro Segawa, Shuhei Yabe, Shigeto Otsuka, Akira Yokota, and Keishi Senoo (2017).
Noviherbaspirillum denitrificans sp. nov., denitrifying bacterium isolated from rice paddy soil and Noviherbaspirillum autotrophicum sp. nov, denitrifying, facultatively autotrophic bacterium isolated from rice paddy soil, and proposal to reclassify Herbaspirillum massiliense as Noviherbaspirillum massiliense comb. nov.International Journal of Systematic and Evolutionary Microbiology, 67: 1841-1848. doi: 10.1099/ijsem.0.001875
Masuda Y, Itoh H, Shiratori Y, Isobe K, Otsuka S, Senoo K. (2017).
Predominant but Previously-overlooked Prokaryotic Drivers of Reductive Nitrogen Transformation in Paddy Soils, Revealed by Metatranscriptomics.Microbes Environ., 32: 180-183
2016
Satoshi Ishii, Kazuki Jokai, Shigeto Otsuka, Keishi Senoo and Satoshi Okabe (2016).
Denitrification and Nitrate-Dependent Fe(II)-Oxidation in Various Pseudogulbenkiania Strains.Microbes Environ. 31: 293-298. doi:10.1264/jsme2.ME16001
Shiozaki, T., Ijichi, M., Isobe, K., Hashihama, F., Nakamura, K., Ehama, M., Hayashizaki, K., Takahashi, K., Hamasaki, K., Furuya, K. (2016).
Nitrification and it influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean.The ISME Journal, 10: 2184–2197. doi:10.1038/ismej.2016.18
Gao N, Shen W, Kakuta H, Tanaka N, Fujiwara T, Nishizawa T, Takaya N, Nagamine T, Isobe K, Otsuka S, Senoo K (2016).
Inoculation with nitrous oxide (N₂O)-reducing denitrifier strains simultaneously mitigates N₂O emission from pasture soil and promotes growth of pasture plants.
Soil Biol. Biochem. 97: 83-91. doi:10.1016/j.soilbio.2016.03.004
Kunito, T., Isomura, I., Sumi, H., Park, H.-D., Toda, H., Otsuka, S., Nagaoka, K., Saeki, K., and Senoo (2016).
Aluminum and acidity suppress microbial activity and biomass in acidic forest soils.Soil Biol. Biochem. 97: 23-30. doi:10.1016/j.soilbio.2016.02.019
Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman J, Abell G, Philippot L, Prosser J, Foulquier A, Yuste J, Glanville H, Jones D, Angel R, Salminen J, Newton RJ, Bürgmann H, Ingram LJ, Hamer U, Siljanen HM, Peltoniemi K, Potthast K, Bañeras L, Hartmann M, Banerjee S, Yu R, Nogaro G, Richter A, Koranda M, Castle S, Goberna M, Song B, Chatterjee A, Nunes OC, Lopes AR, Cao Y, Kaisermann A, Hallin S, Strickland MS, Garcia-Pausas J, Barba J, Kang H, Isobe K, Papaspyrou S, Pastorelli R, Lagomarsino A, Lindström E, Basiliko N, Nemergut DR (2016).
Microbes as engines of ecosystem function: when does community structure enhance predictions of ecosystem processes?Front. Microbiol. 7: 214. doi:10.3389/fmicb.2016.00214
Urakawa, R., Ohte, N., Shibata, H., Isobe, K., Tateno, R., Oda, T., Hishi, T., Fukushima, K., Inagaki, Y., Hirai, K., Oyanagi, N., Nakata, N., Toda, H., Kenta, T., Kuroiwa, M., Watanabe, T., Fukuzawa, K., Tokuchi, N., Ugawa, S., Enoki, T., Nakanishi, A., Saigusa, N., Yamao, and Kotani, A. (2016).
Factors contributing to nitrogen mineralization and nitrification rates of forest soils in the Japanese archipelago.Forest Ecol Manage. 361: 382-396. doi:10.1016/j.foreco.2015.11.033
2015
Wei, W., Isobe, K., Nishizawa, T., Zhu, L., Shiratori, Y., Ohte, N., Koba, K., Otsuka, S., Senoo, K. (2015).
Higher diversity and abundance of denitrifying microorganisms in environments than considered previously.ISME J. 9: 1954-1965. doi:10.1038/ismej.2015.9 (press release)
Shi, J., Ohte N., Tokuchi, N., Isobe, K., Urakawa, R., Imamura, N., Oda, T., Suzuki, M. (2015).
Soil nitrogen transformation dynamics in a suburban forest near Tokyo Metropolitan Area under high nitrogen deposition: A case study using stable isotope tracer techniques.Bull. Tokyo Univ. For.132, 17-34
Umezawa, K., Takeda, K., Ishida, T., Sunagawa, N., Makabe, A., Isobe, K., Koba, K., Ohno,H., Samejima, M., Nakamura, N., Igarashi, K., Yoshida M. (2015).
A novel pyrroloquinoline quinone-dependent 2-Keto-D-Glucose dehydrogenase from Pseudomonas aureofaciens.J. Bacteriol online publication 197: 1322-1329. doi:10.1128/JB.02376-14
Isobe, K., Ohte, N., Oda, T., Murabayashi, S., Wei, W., Senoo, K., Tokuchi, N., and Tateno, R. (2015).
Microbial regulation of nitrogen dynamics along the hillslope of a natural forest.Front. Environ. Sci. 2: 63. doi:10.3389/fenvs.2014.00063
Wei, W., Isobe, K., Shiratori, Y., Nishizawa, T., Ohte, N., Ise, Y., Otsuka, S., Senoo, K. (2015).
Development of PCR primers targeting fungal nirK to study fungal denitrification in the environment.Soil Biol Biochem. 81: 282-286. doi:10.1016/j.soilbio.2014.11.026
Urakawa, R., Ohte, N., Shibata, H., Tateno, R., Hishi, T., Fukushima, K., Inagaki, Y., Hirai, K., Oda, T., Oyanagi, N., Nakata, N., Toda, H., Kenta, T., Fukuzawa, K., Watanabe, T., Tokuchi, N., Nakaji, T., Saigusa, N., Yamao, Y., Nakanishi, A., Enoki, T., Ugawa, S., Hayakawa, A., Kotani, A., Kuroiwa, M., and Isobe, K. (2015).
Biogeochemical nitrogen properties of forest soils in the Japanese archipelago.Ecol Res. 30: 1-2. doi:10.1007/s11284-014-1212-8
2014
Nishizawa, T., Quan, A., Kai, A., Tago, K., Ishii, S., Shen, W., Isobe, K., Otsuka, S., and Senoo, K. (2014).
Inoculation with N₂-generating denitrifier strains mitigates N₂O emission from agricultural soil fertilized with poultry manure.
Biol. Fertil. Soils 50: 1001–1007. doi:10.1007/s00374-014-0918-7
Wei, W., Isobe, K., Shiratori, Y., Nishizawa, T., Ohte, N., Otsuka, S., and Senoo, K. (2014).
N₂O emission from cropland field soil through fungal denitrification after surface applications of organic fertilizer.
Soil Biol. Biochem. 69: 157–167. doi:10.1016/j.soilbio.2013.10.044
Itoh, H., Ishii, S., Shiratori, Y., Oshima, K., Otsuka, S., Hattori, M., and Senoo, K. (2013).
Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils.Microbes Environ. 28, 370–380. doi:10.1264/jsme2.ME13030
Nishizawa, T., Uei, Y., Tago, K., Isobe, K., Otsuka, S., and Senoo, K. (2013).
Taxonomic composition of denitrifying bacterial isolates is different among three rice paddy field soils in Japan.Soil Sci. Plant Nutr. 59, 305–310. doi:10.1080/00380768.2013.773256.
Thi Vu, H., Itoh, H., Ishii, S., Senoo, K., and Otsuka, S. (2013).
Identification and Phylogenetic Characterization of Cobalamin Biosynthetic Genes of Ensifer adhaerens.Microbes Environ. 28, 153–155. doi:10.1264/jsme2.ME12069
2012
Isobe, K., Koba, K., Suwa, Y., Ikutani, J., Fang, Y., Yoh, M., Mo, J., Otsuka, S., and Senoo, K. (2012).
High abundance of ammonia-oxidizing archaea in acidified subtropical forest soils in southern China after long-term N deposition.FEMS Microbiol. Ecol. 80, 193–203. doi:10.1111/j.1574-6941.2011.01294.x
Isobe, K., Koba, K., Suwa, Y., Ikutani, J., Kuroiwa, M., Fang, Y., Yoh, M., Mo, J., Otsuka, S., and Senoo, K. (2012).
Nitrite transformations in an N-saturated forest soil.Soil Biol. Biochem. 52, 61–63. doi:10.1016/j.soilbio.2012.04.006.
Nishiyama, M., Sugita, R., Otsuka, S., and Senoo, K. (2012).
Community structure of bacteria on different types of mineral particles in a sandy soil.Soil Sci. Plant Nutr. 58, 562–567. doi:10.1080/00380768.2012.729226.
Nishizawa, T., Tago, K., Oshima, K., Hattori, M., Ishii, S., Otsuka, S., and Senoo, K. (2012).
Complete genome sequence of the denitrifying and N₂O-reducing bacterium Azoarcus sp. strain KH32C.
J. Bacteriol. 194, 1255. doi:10.1128/JB.06618-11
Koba, K., Fang, Y., Mo, J., Zhang, W., Lu, X., Liu, L., Zhang, T., Takebayashi, Y., Toyoda, S., Yoshida, N., et al. (2012).
The 15N natural abundance of the N lost from an N-saturated subtropical forest in southern China.J. Geophys. Res. Biogeosciences 117. doi:10.1029/2010JG001615
Nishizawa, T., Tago, K., Uei, Y., Ishii, S., Isobe, K., Otsuka, S., and Senoo, K. (2012).
Advantages of functional single-cell isolation method over standard agar plate dilution method as a tool for studying denitrifying bacteria in rice paddy soil.AMB Express 2, 50. doi:10.1186/2191-0855-2-50
Kuroiwa, M., Koba, K., Isobe, K., Tateno, R., Nakanishi, A., Inagaki, Y., Toda, H., Otsuka, S., Senoo, K., Suwa, Y., et al. (2011).
Gross nitrification rates in four Japanese forest soils: heterotrophic versus autotrophic and the regulation factors for the nitrification.J. For. Res. 16, 363–373. doi:10.1007/s10310-011-0287-0
Isobe, K., Koba, K., Ueda, S., Senoo, K., Harayama, S., and Suwa, Y. (2011).
A simple and rapid GC/MS method for the simultaneous determination of gaseous metabolites.J. Microbiol. Methods 84, 46–51. doi:10.1016/j.mimet.2010.10.009.
Isobe, K., Suwa, Y., Ikutani, J., Kuroiwa, M., Makita, T., Takebayashi, Y., Yoh, M., Otsuka, S., Senoo, K., Ohmori, M., et al. (2011).
Analytical Techniques for Quantifying 15N/14N of Nitrate, Nitrite, Total Dissolved Nitrogen and Ammonium in Environmental Samples Using a Gas Chromatograph Equipped with a Quadrupole Mass Spectrometer.Microbes Environ. 26, 46–53. doi:10.1264/jsme2.ME10159
Tago, K., Ishii, S., Nishizawa, T., Otsuka, S., and Senoo, K. (2011).
Phylogenetic and Functional Diversity of Denitrifying Bacteria Isolated from Various Rice Paddy and Rice-Soybean Rotation Fields.Microbes Environ. 26, 30–35. doi:10.1264/jsme2.ME10167
Ishii, S., Ohno, H., Tsuboi, M., Otsuka, S., and Senoo, K. (2011).
Identification and isolation of active N₂O reducers in rice paddy soil.
ISME J. 5, 1936–45. doi:10.1038/ismej.2011.69
Ishii, S., Tago, K., Nishizawa, T., Oshima, K., Hattori, M., and Senoo, K. (2011).
Complete genome sequence of the denitrifying and N(₂)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B.
J. Bacteriol. 193, 6395–6. doi:10.1128/JB.06127-11
2010
Yoshida, M., Ishii, S., Otsuka, S., and Senoo, K. (2010).
nirK-Harboring Denitrifiers Are More Responsive to Denitrification- Inducing Conditions in Rice Paddy Soil Than nirS-Harboring Bacteria.Microbes Environ. 25, 45–48. doi:10.1264/jsme2.ME09160
Koba, K., Isobe, K., Takebayashi, Y., Fang, Y. T., Sasaki, Y., Saito, W., Yoh, M., Mo, J., Liu, L., Lu, X., et al. (2010).
Delta15N of soil N and plants in a N-saturated, subtropical forest of southern China.Rapid Commun. Mass Spectrom. 24, 2499–506. doi:10.1002/rcm.4648
Ishii, S., Yamamoto, M., Tago, K., Otsuka, S., and Senoo, K. (2010).
Microbial populations in various paddy soils respond differently to denitrification-inducing conditions, albeit background bacterial populations are similar.Soil Sci. Plant Nutr. 56, 220–224. doi:10.1111/j.1747-0765.2010.00453.x
Vu, H. T., Otsuka, S., Ueda, H., and Senoo, K. (2010).
Cocultivated bacteria can increase or decrease the culture lifetime of Chlorella vulgaris. J. Gen. Appl. Microbiol. 418, 413–418.
Ashida, N., Ishii, S., Hayano, S., Tago, K., Tsuji, T., Yoshimura, Y., Otsuka, S., and Senoo, K. (2010).
Isolation of functional single cells from environments using a micromanipulator: application to study denitrifying bacteria.Appl. Microbiol. Biotechnol. 85, 1211–7. doi:10.1007/s00253-009-2330-z
2009
Ishii, S., Yamamoto, M., Kikuchi, M., Oshima, K., Hattori, M., Otsuka, S., and Senoo, K. (2009).
Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis. Appl. Environ. Microbiol. 75, 7070–8. doi:10.1128/AEM.01481-09.
Ishii, S., Kadota, K., and Senoo, K. (2009).
Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data. J. Microbiol. Methods 78, 344–50. doi:10.1016/j.mimet.2009.07.005.
Yamamoto, S., Otsuka, S., Murakami, Y., Nishiyama, M., and Senoo, K. (2009).
Genetic diversity of gamma-hexachlorocyclohexane-degrading sphingomonads isolated from a single experimental field. Lett. Appl. Microbiol. 49, 472–7. doi:10.1111/j.1472-765X.2009.02691.x.
Ueda, H., Otsuka, S., and Senoo, K. (2009).
Community composition of bacteria co-cultivated with microalgae in non-axenic algal cultures. Microbiol. Cult. Collect., 21–25.
Yoshida, M., Ishii, S., Otsuka, S., and Senoo, K. (2009).
Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil. Soil Biol. Biochem. 41, 2044–2051. doi:10.1016/j.soilbio.2009.07.012.
Isobe, K., Otsuka, S., Sudiana, I., Nurkanto, A., and Senoo, K. (2009).
Community composition of soil bacteria nearly a decade after a fire in a tropical rainforest in East Kalimantan , Indonesia. J. Gen. Appl. Microbiol. 337, 329–337.
2008
Saito, T., Ishii, S., Otsuka, S., Nishiyama, M., and Senoo, K. (2008).
Identification of Novel Betaproteobacteria in a Succinate-Assimilating Population in Denitrifying Rice Paddy Soil by Using Stable Isotope Probing. Microbes Environ. 23, 192–200. doi:10.1264/jsme2.23.192.
Otsuka, S., Sudiana, Im., Komori, A., Isobe, K., Deguchi, S., Nishiyama, M., Shimizu, H., and Senoo, K. (2008).
Community Structure of Soil Bacteria in a Tropical Rainforest Several Years After Fire. Microbes Environ. 23, 49–56. doi:10.1264/jsme2.23.49.
2007
Kuramochi, N., S. Otsuka, M. Nishiyama, and K. Senoo. (2007).
Presence of linA-homologous DNA sequences in different types of soil and their sequence diversity. Microbes Environ. 22:399-404.
Kotani-Tanoi, T., M. Nishiyama, S. Otsuka, K. Senoo. (2007).
Single particle analysis reveals that bacterial community structures are semi-specific to the type of their inhabiting soil particle.Soil Sci. Plant Nutr. 53:740-743.
Harada, N., M. Nishiyama, S. Otsuka, and S. Matsumoto. (2007).
Enhanced methanogenesis in the vicinity of rice straw residues in surface layers of a paddy soil. Soil Microorganisms 61:17-21.
Senoo, K., Z. Solaiman, S. Tanaka, M. Kawaguchi, H. Imaizumi-Anraku, S. Akao, A. Tanaka, and H. Obata. (2007).
Isolation and characterization of arbuscules from roots of an increased arbuscule forming mutant of Lotus japonicus. Ann. Bot. 100:1599-1603.
Otsuka, S (2019). Roseimicrobium. In Bergey's Manual of Systematics of
Archaea and Bacteria. Whitman W.B. (Ed.), John Wiley & Sons, Inc.,
in association with Bergey’s Manual Trust, (Published online) DOI: 10.1002/9781118960608.gbm01550.
Otsuka, S (2019). Brevifollis. In Bergey's Manual of Systematics of Archaea and Bacteria. Whitman W.B. (Ed.), John Wiley & Sons, Inc., in association with Bergey’s Manual Trust, (Published online) DOI: 10.1002/9781118960608.gbm01545.
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伊藤秀臣, 石井聡, 妹尾啓史 (2010). 水田土壌のメタゲノム解析 In メタゲノム解析技術の最前線. p215-221. シーエムシー出版