2018
- Fujita, K., Kunito, T., Matsushita, J., Nakamura, K., Moro, H., Yoshida, S., Toda, H., Otsuka, S., and Nagaoka, K. (2018). Nitrogen supply rate regulates microbial resource allocation for synthesis of nitrogen- acquiring enzymes. PLoS ONE, 13: e0202086.
- Jeonghwan Jang, Naoaki Ashida, Ayaaki Kai, Kazuo Isobe, Tomoyasu Nishizawa, Shigeto Otsuka, Akira Yokota, Keishi Senoo and Satoshi Ishii (2018). Presence of Cu-type (NirK) and cd1-type (NirS) nitrite reductase genes in the denitrifying bacterium Bradyrhizobium nitroreducens sp. nov. Microbes Environ., 33: 326-331. doi: 10.1264/jsme2.ME18039
- Kazumori Mise, Kazuki Fujita, Takashi Kunito, Keishi Senoo and Shigeto Otsuka (2018). Phosphorus-mineralizing communities reflect nutrient-rich characteristics in Japanese arable Andisols. Microbes Environ., 33: 282-289. doi: 10.1264/jsme2.ME18043
- Kazuo Isobe, Hiroaki Oka, Tsunehiro Watanabe, Ryunosuke Tateno, Rieko Urakawa, Chao Liang, Keishi Senoo and Hideaki Shibata (2018). High soil microbial activity in the winter season enhances nitrogen cycling in a cool-temperate deciduous forest. Soil Biol Biochem, 124: 90-100. doi: 10.1016/j.soilbio.2018.05.028
- Pokchat Chutivisut, Kazuo Isobe, Sorawit Powtongsook, Wiboonluk Pungrasmi and Futoshi Kurisu (2018). Distinct Microbial Community Performing Dissimilatory Nitrate Reduction to Ammonium (DNRA) in a High C/NO₃- Reactor. Microbes Environ, 33: 1342-6311. doi: 10.1264/jsme2.ME17193
- Kazuo Isobe, Junko Ikutani, Yunting Fang, Muneoki Yoh, Jiangming Mo, Yuichi Suwa, Makoto Yoshida, Keishi Senoo, Shigeto Otsuka and Keisuke Koba (2018). Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in nitrogen-saturated forest soils. Soil Biol. Biochem., 122: 220-227. doi: 10.1016/j.soilbio.2018.04.021
- 増田曜子 (2018).
水田土壌の鉄還元菌のもう一つの顔－窒素肥沃度を支えるキープレーヤー－.土と微生物（Soil Microorganisms）72(1): 7-13
- Yoko Masuda, Hideomi Itoh, Yutaka Shiratori and Keishi Senoo (2018). Metatranscriptomic insights into microbial consortia driving methane metabolism in paddy soils. Soil Sci. Plant Nutr.,64(4): 455-464. doi: 10.1080/00380768.2018.1457409
- Zakaria M. Solaiman and Keishi Senoo (2018). Arbuscular mycorrhizal fungus causes increased condensed tannins concentrations in shoots but decreased in roots of Lotus japonicas. Rhizosphere, 5: 32-37. doi: 10.1016/j.rhisph.2017.11.006
2017
- Nan Gao, Weishou Shen, Estefania Camargo, Yutaka Shiratori, Tomoyasu Nishizawa, Kazuo Isobe, Xinhua He, Keishi Senoo (2017). Nitrous oxide (N₂O)-reducing denitrifier-inoculated organic fertilizer mitigates N₂O emission from agricultural soils. Biol Fertil. Soils, 53: 885-898. doi: 10.1007/s00374-017-1231-z
- Nanae Hosokawa, Kazuo Isobe, Rieko Urakawa, Ryunosuke Tateno, Karibu Fukuzawa, Tsunehiro Watanabe, Hideaki Shibata (2017). Soil freeze–thaw with root litter alters N transformations during the dormant season in soils under two temperate forests in northern Japan. Soil Biology and Biochemistry, 114: 270–278. doi: 10.1016/j.soilbio.2017.07.025
- Akihiko Terada, Sho Sugawara, Keisuke Hojo, Yuki Takeuchi, Shohei Riya, Willie F Harper Jr, Tomoko Yamamoto, Megumi Kuroiwa, Kazuo Isobe, Chie Katsuyama, Yuichi Suwa, Keisuke Koba, Masaaki Hosomi (2017). Hybrid Nitrous Oxide Production from a Partial Nitrifying Bioreactor: Hydroxylamine Interactions with Nitrite. Environmental Science and Technology, 51: 2748–2756. doi: 10.1021/acs.est.6b05521
- Fujita, K., Kunito, T., Moro, H., Toda, H., Otsuka, S., and Nagaoka, K. (2017). Microbial resource allocation for phosphatase synthesis reflects the availability of inorganic phosphorus across various soils. Biogeochemistry, 136: 325-339. doi: 10.1007/s10533-017-0398-6
- Yabe, S., Sakai, Y., Abe, Y., Yokota, A., Také, A., Matsumoto, A., Sugiharto, A., Susilowati, D., Hamada, M., Nara, K., Sudiana, I M., and Otsuka, S. (2017). Dictyobacter aurantiacus gen. nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix. International Journal of Systematic and Evolutionary Microbiology, 67: 2615-2621. doi: 10.1099/ijsem.0.001985
- Satoshi Ishii, Naoaki Ashida, Hiroki Ohno, Takahiro Segawa, Shuhei Yabe, Shigeto Otsuka, Akira Yokota, and Keishi Senoo (2017). Noviherbaspirillum denitrificans sp. nov., denitrifying bacterium isolated from rice paddy soil and Noviherbaspirillum autotrophicum sp. nov, denitrifying, facultatively autotrophic bacterium isolated from rice paddy soil, and proposal to reclassify Herbaspirillum massiliense as Noviherbaspirillum massiliense comb. nov. International Journal of Systematic and Evolutionary Microbiology, 67: 1841-1848. doi: 10.1099/ijsem.0.001875
- Masuda Y, Itoh H, Shiratori Y, Isobe K, Otsuka S, Senoo K. (2017). Predominant but Previously-overlooked Prokaryotic Drivers of Reductive Nitrogen Transformation in Paddy Soils, Revealed by Metatranscriptomics. Microbes Environ., 32: 180-183
2016
- Satoshi Ishii, Kazuki Jokai, Shigeto Otsuka, Keishi Senoo and Satoshi Okabe (2016). Denitrification and Nitrate-Dependent Fe(II)-Oxidation in Various Pseudogulbenkiania Strains. Microbes Environ. 31: 293-298. doi:10.1264/jsme2.ME16001
- Shiozaki, T., Ijichi, M., Isobe, K., Hashihama, F., Nakamura, K., Ehama, M., Hayashizaki, K., Takahashi, K., Hamasaki, K., Furuya, K. (2016). Nitrification and it influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean. The ISME Journal, 10: 2184–2197. doi:10.1038/ismej.2016.18
- Gao N, Shen W, Kakuta H, Tanaka N, Fujiwara T, Nishizawa T, Takaya N, Nagamine T, Isobe K, Otsuka S, Senoo K (2016). Inoculation with nitrous oxide (N₂O)-reducing denitrifier strains simultaneously mitigates N₂O emission from pasture soil and promotes growth of pasture plants. Soil Biol. Biochem. 97: 83-91. doi:10.1016/j.soilbio.2016.03.004
- Kunito, T., Isomura, I., Sumi, H., Park, H.-D., Toda, H., Otsuka, S., Nagaoka, K., Saeki, K., and Senoo (2016). Aluminum and acidity suppress microbial activity and biomass in acidic forest soils. Soil Biol. Biochem. 97: 23-30. doi:10.1016/j.soilbio.2016.02.019
- Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman J, Abell G, Philippot L, Prosser J, Foulquier A, Yuste J, Glanville H, Jones D, Angel R, Salminen J, Newton RJ, Bürgmann H, Ingram LJ, Hamer U, Siljanen HM, Peltoniemi K, Potthast K, Bañeras L, Hartmann M, Banerjee S, Yu R, Nogaro G, Richter A, Koranda M, Castle S, Goberna M, Song B, Chatterjee A, Nunes OC, Lopes AR, Cao Y, Kaisermann A, Hallin S, Strickland MS, Garcia-Pausas J, Barba J, Kang H, Isobe K, Papaspyrou S, Pastorelli R, Lagomarsino A, Lindström E, Basiliko N, Nemergut DR (2016). Microbes as engines of ecosystem function: when does community structure enhance predictions of ecosystem processes? Front. Microbiol. 7: 214. doi:10.3389/fmicb.2016.00214
- Urakawa, R., Ohte, N., Shibata, H., Isobe, K., Tateno, R., Oda, T., Hishi, T., Fukushima, K., Inagaki, Y., Hirai, K., Oyanagi, N., Nakata, N., Toda, H., Kenta, T., Kuroiwa, M., Watanabe, T., Fukuzawa, K., Tokuchi, N., Ugawa, S., Enoki, T., Nakanishi, A., Saigusa, N., Yamao, and Kotani, A. (2016). Factors contributing to nitrogen mineralization and nitrification rates of forest soils in the Japanese archipelago. Forest Ecol Manage. 361: 382-396. doi:10.1016/j.foreco.2015.11.033
2015
- Wei, W., Isobe, K., Nishizawa, T., Zhu, L., Shiratori, Y., Ohte, N., Koba, K., Otsuka, S., Senoo, K. (2015). Higher diversity and abundance of denitrifying microorganisms in environments than considered previously. ISME J. 9: 1954-1965. doi:10.1038/ismej.2015.9
- Ali, M., Oshiki, M., Awata, T., Isobe, K., Kimura, Z., Yoshikawa, H., Hira, D., Kindaichi, T., Satoh, H., Fujii, T., and Okabe, S. (2015) Physiological Characterization of Anaerobic Ammonium Oxidizing Bacterium “Candidatus Jettenia caeni”. Environ Microbiol. online publication. 17: 2172-2189. doi:10.1111/1462-2920.12674
- Shi, J., Ohte N., Tokuchi, N., Isobe, K., Urakawa, R., Imamura, N., Oda, T., Suzuki, M. (2015). Soil nitrogen transformation dynamics in a suburban forest near Tokyo Metropolitan Area under high nitrogen deposition: A case study using stable isotope tracer techniques.Bull. Tokyo Univ. For.132, 17-34
- Umezawa, K., Takeda, K., Ishida, T., Sunagawa, N., Makabe, A., Isobe, K., Koba, K., Ohno,H., Samejima, M., Nakamura, N., Igarashi, K., Yoshida M. (2015). A novel pyrroloquinoline quinone-dependent 2-Keto-D-Glucose dehydrogenase from Pseudomonas aureofaciens. J. Bacteriol online publication 197: 1322-1329. doi:10.1128/JB.02376-14
- Isobe, K., Ohte, N., Oda, T., Murabayashi, S., Wei, W., Senoo, K., Tokuchi, N., and Tateno, R. (2015). Microbial regulation of nitrogen dynamics along the hillslope of a natural forest. Front. Environ. Sci. 2: 63. doi:10.3389/fenvs.2014.00063
- Wei, W., Isobe, K., Shiratori, Y., Nishizawa, T., Ohte, N., Ise, Y., Otsuka, S., Senoo, K. (2015). Development of PCR primers targeting fungal nirK to study fungal denitrification in the environment. Soil Biol Biochem. 81: 282-286. doi:10.1016/j.soilbio.2014.11.026
- Urakawa, R., Ohte, N., Shibata, H., Tateno, R., Hishi, T., Fukushima, K., Inagaki, Y., Hirai, K., Oda, T., Oyanagi, N., Nakata, N., Toda, H., Kenta, T., Fukuzawa, K., Watanabe, T., Tokuchi, N., Nakaji, T., Saigusa, N., Yamao, Y., Nakanishi, A., Enoki, T., Ugawa, S., Hayakawa, A., Kotani, A., Kuroiwa, M., and Isobe, K. (2015). Biogeochemical nitrogen properties of forest soils in the Japanese archipelago. Ecol Res. 30: 1-2. doi:10.1007/s11284-014-1212-8